About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109776832_109777312_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109776832 - 109777312
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTGT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TCTGTCTTAACA
Flanking Amino Acid:
PGSVSPIHGQGQPVENLKAQ
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
73.8
37.5
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
77.6
0.62
0.9
73.2
36
Minor 5ss
47.4
-0.3
2.7
67.3
43.8
Minor BPS
74.7
0.77
1.3
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034290
109753143 - 109784970
31828
ENSAPLT00000013987
109753143 - 109785296
32154
ENSAPLT00000036827
109753143 - 109784970
31828