About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109783941_109784830_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109783941 - 109784830
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTGCCTTATCT
Flanking Amino Acid:
MDVFNSQLKCENMDDSVLQ
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.5
0.73
0.8
75.9
32.4
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
68.7
0.67
1.7
83.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013325
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034290
109753143 - 109784970
31828