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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109839650_109840672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109839650 - 109840672
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTTTTACTT
Flanking Amino Acid:
TFRERMAEHMVSVSDESSED
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.9
0.9
0.7
82.1
34.6
Minor 5ss
34.6
-1.7
2.7
33.4
41.6
Minor BPS
63.3
0.5
1.6
78.42
39.1

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860