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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109840759_109842015_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109840759 - 109842015
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAGT
5'SS Class:
major
3'SS Sequence:
ACAATTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTGTCTTAAAA
Flanking Amino Acid:
QIKKAVKLSQEIYSDASLCK
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
73.5
37.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
73
0.52
1
65.3
40.3
Minor 5ss
29.8
-2.3
2.9
40.9
44.9
Minor BPS
71.6
0.68
1.5
80.08
35.8

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860