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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109842132_109843196_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109842132 - 109843196
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATTTTCAATT
Flanking Amino Acid:
LEIVKKRLTERITSLQDVHC
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.2
0.81
0.7
85.1
29.7
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
61.1
0.43
1.4
74.9
36.1

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860