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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109849595_109849863_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109849595 - 109849863
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATATTATGAATT
Flanking Amino Acid:
IEKTVLPKIAAFVQNVWDPL
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
54.8
0.23
1.7
73.32
37.1

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860