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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109850866_109851446_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109850866 - 109851446
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TTTTCATGACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
EDVFIPLYPKSTVEDKSSPG
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.1
0.52
1
67.4
42.7
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860