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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109852634_109852857_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109852634 - 109852857
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTACCTAACT
Flanking Amino Acid:
CARVLHKNNQSDETKEVILL
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.77
0.7
80
31.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
61.2
0.43
1.9
80.57
40.7

Associated Gene:

Gene:
GCFC2
Ensembl Gene ID:
ENSAPLG00000014163
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014794
109837113 - 109852972
15860