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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109874784_109931595_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109874784 - 109931595
Intron Length:
56812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTGTCACTAATG
Flanking Amino Acid:
NFARTSADFSGYISQVLKNY
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
48.5
-0.2
2
57.04
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028660
109874684 - 110082888
208205