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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109947568_109964029_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109947568 - 109964029
Intron Length:
16462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GAGTAATTAAGT
Flanking Amino Acid:
YLLVWYKCRPNEYKSKVACE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
47.4
-0.1
2.1
64.47
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028660
109874684 - 110082888
208205