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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_109964183_109980706_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109964183 - 109980706
Intron Length:
16524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAAAAATA
Flanking Amino Acid:
PYQNLGMPMIDCQSATALQL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
86.2
0.81
0.6
81.9
22.9
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
47.9
-0.1
2.1
66.9
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028660
109874684 - 110082888
208205