About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11002827_11003272_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11002827 - 11003272
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TGCTTGCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TCGGCGCTGACC
Flanking Amino Acid:
DLLHPSVGYPATPRKQRRER
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71
0.47
0.9
61.8
40
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
42.6
-0.6
2.4
53.82
44.6

Associated Gene:

Gene:
OTX1
Ensembl Gene ID:
ENSAPLG00000024184
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022014
11001188 - 11003369
2182