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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110075121_110082517_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110075121 - 110082517
Intron Length:
7397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTTCTCAAGC
Flanking Amino Acid:
NILAAYAFITENPERAALYF
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
57.5
0.22
1.9
69.88
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014546
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028660
109874684 - 110082888
208205
ENSAPLT00000015161
110019633 - 110083051
63419