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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11010444_11010537_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11010444 - 11010537
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCCT
U12 Branch Point Sequence:
TCCTCCTCCTCC
Flanking Amino Acid:
LVRDLDAQEKQAEEEDEHLE
Intron Amino Acid Position:
1180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
32.6
-1
4.2
67.6
40.6
Major PPT
77.7
0.62
0.7
72.4
25.7
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
37.8
-0.9
3.6
57.93
46.9

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036041
11010262 - 11214893
204632
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632