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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11010653_11015869_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11010653 - 11015869
Intron Length:
5217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
RELRAMLAIEDWQKTEAQKR
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.7
0.56
0.8
72.1
32.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632