Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11015724_11015869_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11015724 - 11015869

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TAGCACGCAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTTAC

U12 Branch Point Sequence:

ATTTACGTAACT

Flanking Amino Acid:

RELRAMLAIEGTRGLQSHPE

Intron Amino Acid Position:

1141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

66.4

0.41

37.6

Major PPT

0.11

1.1

47.6

39.8

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

63.8

0.51

2.2

87.6

37.5

Associated Gene:

Gene:

EHBP1

Ensembl Gene ID:

ENSAPLG00000006773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047278

11015122 - 11214893

199772