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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11015944_11017085_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11015944 - 11017085
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
GCAACTTGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATGAACT
Flanking Amino Acid:
LIRRMNQLSLLEKEHDLERR
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
54.7
0.11
1
46.2
41.1
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
54
0.2
2.1
79.77
41.5

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036041
11010262 - 11214893
204632
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632