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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11017186_11044339_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11017186 - 11044339
Intron Length:
27154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CAGTAATGAAAT
Flanking Amino Acid:
EKRLRYLMDTGRNTEEEEAM
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
67.7
0.44
1
58
38.9
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
43.7
-0.4
1.9
58.05
43.7

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632