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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110179199_110225018_F

Intron Information:

Intron Rank:
146140
Intron Class:
major
Intron Phase:
Intron Coordinates:
110179199 - 110225018
Intron Length:
45820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TCCTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ACAGAAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73
33.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
82.1
0.72
0.8
76.2
32.4
Minor 5ss
26.9
-2.7
2.7
23.1
36.9
Minor BPS
42.9
-0.4
2
58.7
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028725
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020945
110178990 - 110238142
59153