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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110276139_110346744_F

Intron Information:

Intron Rank:
126956
Intron Class:
major
Intron Phase:
Intron Coordinates:
110276139 - 110346744
Intron Length:
70606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.9
0.54
1
75.6
33.3
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
60.1
0.4
1.6
75.75
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018407
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046262
110276045 - 110346956
70912