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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110304999_110313628_F

Intron Information:

Intron Rank:
145159
Intron Class:
major
Intron Phase:
Intron Coordinates:
110304999 - 110313628
Intron Length:
8630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
70.5
0.64
1.5
76.64
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028278
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039399
110304930 - 110317364
12435