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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110311715_110312295_F

Intron Information:

Intron Rank:
151174
Intron Class:
major
Intron Phase:
Intron Coordinates:
110311715 - 110312295
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTGTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
ATTGTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
78.1
0.63
1
73.8
40
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
71.3
0.66
1.3
76.76
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031216
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017252
110310810 - 110313301
2492