About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110313746_110317052_F

Intron Information:

Intron Rank:
145160
Intron Class:
major
Intron Phase:
Intron Coordinates:
110313746 - 110317052
Intron Length:
3307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TACATCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTCTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.2
0.66
0.9
72.3
37.4
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
56.6
0.29
1.7
75.29
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028278
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039399
110304930 - 110317364
12435