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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110404305_110405601_R

Intron Information:

Intron Rank:
139409
Intron Class:
major
Intron Phase:
Intron Coordinates:
110404305 - 110405601
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.7
0.65
0.9
74.8
39.5
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
47.8
-0
2
68.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022480
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040482
110401835 - 110406692
4858