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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11050352_11060620_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11050352 - 11060620
Intron Length:
10269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTTGCATATTT
Flanking Amino Acid:
KLKERSKASGAEQNSKLVDL
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.3
0.52
0.9
71.3
38.9
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
48.5
-0
2.2
75.18
41.9

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036041
11010262 - 11214893
204632