About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110507540_110508423_R

Intron Information:

Intron Rank:
150668
Intron Class:
major
Intron Phase:
Intron Coordinates:
110507540 - 110508423
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
67.8
0.55
1.6
76.94
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028559
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031793
110506376 - 110508733
2358