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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110512879_110539692_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110512879 - 110539692
Intron Length:
26814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTAC
5'SS Class:
major
3'SS Sequence:
CTTTCCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATCTTTTTACTT
Flanking Amino Acid:
QIHRAVLEMKDGRSSFIGHQ
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.8
33.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.7
73.2
31.7
Minor 5ss
38
-1.3
3.1
49.2
47.3
Minor BPS
58.8
0.35
1.6
72.81
39.3

Associated Gene:

Gene:
PTCHD4
Ensembl Gene ID:
ENSAPLG00000014556
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015168
110512453 - 110597847
85395