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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11053626_11060620_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11053626 - 11060620
Intron Length:
6995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
CTAACCTTAATG
Flanking Amino Acid:
KLKERSKASGDEDEDDDNIE
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
80.3
0.68
0.9
73.5
36.8
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
67.5
0.41
1.4
64.98
43

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000039191
11010262 - 11214893
204632