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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110540174_110596213_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110540174 - 110596213
Intron Length:
56040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATTT
Flanking Amino Acid:
TLLGIPFFAMGHGTKGVFEL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.7
34.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
41.3
-1
2.9
52.3
44.3
Minor BPS
50.2
0.08
1.8
68.21
43.2

Associated Gene:

Gene:
PTCHD4
Ensembl Gene ID:
ENSAPLG00000014556
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015168
110512453 - 110597847
85395