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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110656735_110663911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110656735 - 110663911
Intron Length:
7177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGATT
5'SS Class:
major
3'SS Sequence:
TTTTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTACCTTTATT
Flanking Amino Acid:
IIAGFYLTVIGILSTLGNGY
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
77.1
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
38.4
-1.3
3.4
54.6
43.8
Minor BPS
66.4
0.6
1.7
80.72
41.2

Associated Gene:

Gene:
OPN5
Ensembl Gene ID:
ENSAPLG00000014644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015258
110646397 - 110699572
53176
ENSAPLT00000037110
110647278 - 110664064
16787
ENSAPLT00000024784
110646397 - 110664179
17783