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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110664065_110699517_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110664065 - 110699517
Intron Length:
35453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TCTTCCTTTTTT
Flanking Amino Acid:
LVRSWGRADTDTELVMNGMA
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46.1
-0.2
3.6
79.54
43

Associated Gene:

Gene:
OPN5
Ensembl Gene ID:
ENSAPLG00000014644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015258
110646397 - 110699572
53176