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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110707341_110708095_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110707341 - 110708095
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACATAAAA
Flanking Amino Acid:
SENVNREKMQSYSRIANHIL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
52.6
0.08
1.9
72.18
38.7

Associated Gene:

Gene:
ADGRF2
Ensembl Gene ID:
ENSAPLG00000014666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015281
110702032 - 110710856
8825