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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110708387_110709005_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110708387 - 110709005
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTTTGTTAATT
Flanking Amino Acid:
ANLDVQSLFQRISEREPLPS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
ADGRF2
Ensembl Gene ID:
ENSAPLG00000014666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015281
110702032 - 110710856
8825