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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110709347_110710739_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110709347 - 110710739
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTACCTTATTT
Flanking Amino Acid:
FPVAPRIAPRVLSKESKTGN
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.3
0.82
0.8
83.9
30.7
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
72.8
0.79
1.6
88.8
36.2

Associated Gene:

Gene:
ADGRF2
Ensembl Gene ID:
ENSAPLG00000014666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015281
110702032 - 110710856
8825