Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110728631_110730777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110728631 - 110730777

Intron Length:

2147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCAGTATA

5'SS Class:

major

3'SS Sequence:

TTTCTTGTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TATTTTTTCACT

Flanking Amino Acid:

KNLLCHHLHPNLMEKSFLFD

Intron Amino Acid Position:

429

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.3

80.8

33.6

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

88.4

0.86

0.8

83.5

31.6

Minor 5ss

36.4

-1.5

2.7

43.6

37.4

Minor BPS

66.9

0.61

1.7

84.25

36.7

Associated Gene:

Gene:

CD2AP

Ensembl Gene ID:

ENSAPLG00000014709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022741

110716797 - 110768885

52089

ENSAPLT00000015346

110716797 - 110790170

73374

ENSAPLT00000015343

110717775 - 110781697

63923