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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110743591_110747900_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110743591 - 110747900
Intron Length:
4310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTGCTTAATT
Flanking Amino Acid:
RWGM*STSVKR*KKAGGVEH
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.6
0.71
0.9
76.6
37.2
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
80.1
1.02
1.6
95.75
31

Associated Gene:

Gene:
CD2AP
Ensembl Gene ID:
ENSAPLG00000014709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022741
110716797 - 110768885
52089
ENSAPLT00000015346
110716797 - 110790170
73374
ENSAPLT00000015343
110717775 - 110781697
63923