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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11079220_11081151_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11079220 - 11081151
Intron Length:
1932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
HADPAAKTAQQRMLSRQEEL
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.6
0.64
1
82.9
32.2
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
EHBP1
Ensembl Gene ID:
ENSAPLG00000006773
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035880
11010262 - 11214893
204632
ENSAPLT00000021322
11010262 - 11214893
204632
ENSAPLT00000047278
11015122 - 11214893
199772
ENSAPLT00000007056
11010262 - 11189599
179338
ENSAPLT00000039191
11010262 - 11214893
204632
ENSAPLT00000036041
11010262 - 11214893
204632