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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110799685_110801154_R

Intron Information:

Intron Rank:
143505
Intron Class:
major
Intron Phase:
Intron Coordinates:
110799685 - 110801154
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.6
0.89
0.6
89.5
19.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
65.9
0.58
1.5
78.88
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044627
110797929 - 110801341
3413