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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110800051_110804825_R

Intron Information:

Intron Rank:
143504
Intron Class:
major
Intron Phase:
Intron Coordinates:
110800051 - 110804825
Intron Length:
4775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTCATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
77.9
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.6
0.82
0.7
80.9
29.7
Minor 5ss
32.4
-2
2.7
35
40.8
Minor BPS
56
0.18
1.9
71.78
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024536
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023262
110797929 - 110804875
6947