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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110826212_110826677_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110826212 - 110826677
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAG
5'SS Class:
major
3'SS Sequence:
CTTCATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTGGATC
Flanking Amino Acid:
LRWSFPVSLKVYGAVMNINR
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.5
43.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.8
0.67
0.8
72.8
31.8
Minor 5ss
36.9
-1.5
3.1
47.4
48
Minor BPS
60.7
0.32
1.4
69.73
36.4

Associated Gene:

Gene:
GLYATL3
Ensembl Gene ID:
ENSAPLG00000028347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024167
110822394 - 110826755
4362