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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110830789_110831232_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110830789 - 110831232
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
KRSLQAPYLQDEILKITNQK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
CENPQ
Ensembl Gene ID:
ENSAPLG00000015001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015646
110830219 - 110834559
4341