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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110831311_110831495_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110831311 - 110831495
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
LEEDEKKAQKVFQEDGTGAL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
35.7
-1.6
3.5
47.9
47.7
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
CENPQ
Ensembl Gene ID:
ENSAPLG00000015001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015646
110830219 - 110834559
4341