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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110831616_110831999_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110831616 - 110831999
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATCT
Flanking Amino Acid:
ANEETLIQLQEEITEAERSA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
0.8
78.6
34.2
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
60.7
0.42
1.6
77.3
39.2

Associated Gene:

Gene:
CENPQ
Ensembl Gene ID:
ENSAPLG00000015001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015646
110830219 - 110834559
4341