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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110833246_110833634_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110833246 - 110833634
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
MDSGILSILCQQSGK
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.2
0.79
0.7
78.2
35.7
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
CENPQ
Ensembl Gene ID:
ENSAPLG00000015001
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015646
110830219 - 110834559
4341