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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110844518_110845517_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110844518 - 110845517
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCATTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAATC
Flanking Amino Acid:
TNDVYEAALKLIEEIEEMGG
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.1
0.56
0.9
72.4
37.4
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
66.7
0.5
1.5
73.85
37.6

Associated Gene:

Gene:
MMUT
Ensembl Gene ID:
ENSAPLG00000015104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022673
110837560 - 110856442
18883
ENSAPLT00000015767
110837560 - 110858600
21041