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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110855147_110856089_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
110855147 - 110856089
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAATGCCA
5'SS Class:
weak_major
3'SS Sequence:
TGATTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATTCTCAACT
Flanking Amino Acid:
EKCLEKRQQSVKDCCGSSQD
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.2
49
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
0.9
66.9
40.3
Minor 5ss
33.1
-1.9
3.3
40.8
45
Minor BPS
68.7
0.66
1.5
80.74
41

Associated Gene:

Gene:
MMUT
Ensembl Gene ID:
ENSAPLG00000015104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022673
110837560 - 110856442
18883