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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110855147_110858371_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
110855147 - 110858371
Intron Length:
3225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAATGCCA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTTTCCTTACAC
Flanking Amino Acid:
EKCLEKRQQSVPTTDHWTWL
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.2
49
41.3
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
80.4
0.68
0.8
76.4
31.2
Minor 5ss
33.1
-1.9
3.3
40.8
45
Minor BPS
72.7
0.69
1.7
83.76
35.4

Associated Gene:

Gene:
MMUT
Ensembl Gene ID:
ENSAPLG00000015104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015767
110837560 - 110858600
21041