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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110860134_110860837_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110860134 - 110860837
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACCAGCT
Flanking Amino Acid:
AAKLEKKLTLMAVLISVGFL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.3
0.77
0.8
78.1
29.9
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
45
-0.3
2.2
74.25
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015462
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016121
110859786 - 110864886
5101