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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110892733_110893115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110892733 - 110893115
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGCTTCTTAACG
Flanking Amino Acid:
PAGLGPAVESESDVFEIMLP
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
70.3
40.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89.1
0.88
0.6
88.3
21.3
Minor 5ss
34.7
-1.7
3.5
50.7
45.7
Minor BPS
74.5
0.63
1.3
71.56
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026976
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043377
110892330 - 110897135
4806