Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_110901274_110904683_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110901274 - 110904683

Intron Length:

3410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCCC

5'SS Class:

major

3'SS Sequence:

TTTTTGTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

CGATCCATGACA

Flanking Amino Acid:

IKGGVWRNTEDEILKAAVMK

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

64.9

37.8

Major BPS

74.5

0.61

79.6

29.1

Major PPT

82.1

0.72

86.9

31.1

Minor 5ss

30.6

-2.2

3.5

42.1

44.9

Minor BPS

57.7

0.24

1.7

65.23

40.7

Associated Gene:

Gene:

CDC5L

Ensembl Gene ID:

ENSAPLG00000015586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039509

110900875 - 110955915

55041

ENSAPLT00000018622

110900875 - 110955915

55041